[ensembl-dev] Draw Plugin in VEP

[Will McLaren]

There isn't a way to do this, as plugins require many of the objects and
in-memory constructs that the VEP creates as it runs, and there is no way
to reconstitute this from just the VEP output itself.

Will


On 9 April 2014 14:38, Genomeo Dev <genomeodev at gmail.com> wrote:

> Thanks for that.
>
> On a related question, is there a standard way for running VEP plugins on
> output already generated from VEP?
>
> G.
>
>
> On 9 April 2014 13:25, Will McLaren <wm2 at ebi.ac.uk> wrote:
>
>> Hello,
>>
>> I'm afraid not, no.
>>
>> This plugin was intended as a proof of concept for others to develop on
>> top of - I'm sure it could be easily improved to give the functionality you
>> desire.
>>
>> You might be interested in pViz, which was announced a couple of weeks
>> back:
>>
>> http://research-pub.gene.com/pviz/app/vep/
>>
>> This does a similar job but has a nice interactive interface.
>>
>> Regards
>>
>> Will McLaren
>> Ensembl Variation
>>
>>
>> On 9 April 2014 12:35, Genomeo Dev <genomeodev at gmail.com> wrote:
>>
>>> Hi,
>>>
>>> The Draw plugin in VEP is quite useful for producing a graphical
>>> representation of where the variant is located related to a transcript.
>>>
>>> While it allows to select for a given manuscript or variant, the output
>>> is not what you expect i.e. a single image showing for example all the
>>> variants mapped onto the chosen manuscript. Rather, this option seems to be
>>> just a filter of what variant-transcript pair images are produced.
>>>
>>> Is there a way to change this to get a single image?
>>>
>>> --
>>> G.
>>>
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>>>
>>
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>>
>
>
> --
> G.
>
> _______________________________________________
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>
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