[ensembl-dev] What is Mouse genome mm37?

[Denise Carvalho-Silva]

Hi Peng,

Just to add to Magali's response, the current assembly of the Mouse genome in Ensembl is GRCm38:

http://www.ensembl.org/Mus_musculus/Info/Annotation#assembly

The previous assembly was NCBIm37:

http://may2012.archive.ensembl.org/Mus_musculus/Info/Index

I believe mm37 refers to the previous assembly of the mouse genome (which was last available in Ensembl release 66). 

Kind regards,
Denise


On 27 Nov 2013, at 16:03, mag wrote:

> Hi Peng,
> 
> The mouse assembly mm9 is also known as MGSCv37 or NCBIM37.
> 
> Since release 68, ensembl has annotated the mouse assembly mm10, or GRCm38.
> 
> To access the old assembly, you can use our archive website:
> http://may2012.archive.ensembl.org/index.html
> 
> 
> Regards,
> Magali
> 
> On 27/11/2013 15:56, Peng Yu wrote:
>> Hi,
>> 
>> I see "Mouse genome mm37, downloaded from ENSEMBL" mentioned in the
>> following file. But I can't find where mm37 genome is from ENSEMBL
>> website. Is it the same as mm9 genome from the ucsc genome browser?
>> Thanks.
>> 
>> ftp://ftp2.cshl.edu/gingeraslab/tracks/STARrelease/STARgenomes/README.txt
>> 
> 
> 
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