[ensembl-dev] What is Mouse genome mm37?

[Denise Carvalho-Silva]

Apologises.

The previous assembly was last available in Ensembl release 67 (not in 66 as I first wrote):

http://may2012.archive.ensembl.org/Mus_musculus/Info/Index

Regards,
Denise

On 27 Nov 2013, at 16:06, Denise Carvalho-Silva wrote:

> Hi Peng,
> 
> Just to add to Magali's response, the current assembly of the Mouse genome in Ensembl is GRCm38:
> 
> http://www.ensembl.org/Mus_musculus/Info/Annotation#assembly
> 
> The previous assembly was NCBIm37:
> 
> http://may2012.archive.ensembl.org/Mus_musculus/Info/Index
> 
> I believe mm37 refers to the previous assembly of the mouse genome (which was last available in Ensembl release 66). 
> 
> Kind regards,
> Denise
> 
> 
> On 27 Nov 2013, at 16:03, mag wrote:
> 
>> Hi Peng,
>> 
>> The mouse assembly mm9 is also known as MGSCv37 or NCBIM37.
>> 
>> Since release 68, ensembl has annotated the mouse assembly mm10, or GRCm38.
>> 
>> To access the old assembly, you can use our archive website:
>> http://may2012.archive.ensembl.org/index.html
>> 
>> 
>> Regards,
>> Magali
>> 
>> On 27/11/2013 15:56, Peng Yu wrote:
>>> Hi,
>>> 
>>> I see "Mouse genome mm37, downloaded from ENSEMBL" mentioned in the
>>> following file. But I can't find where mm37 genome is from ENSEMBL
>>> website. Is it the same as mm9 genome from the ucsc genome browser?
>>> Thanks.
>>> 
>>> ftp://ftp2.cshl.edu/gingeraslab/tracks/STARrelease/STARgenomes/README.txt
>>> 
>> 
>> 
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> 
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