[ensembl-dev] VEP Ensembl & Gene Ontology

[Magali]

Hi Guillermo,

Ensembl imports the GO annotations every release, in an ensembl
compatible schema.
We then add available GO symbols as external references for translations.
These are represented on the web page in the 'Ontology graph' and
'Ontology table' tab for transcripts with translations.
http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000125871;r=20:17949556-17971765;t=ENST00000377710

This is supported as part of our core API, using the module
OntologyTermAdaptor and OntologyTerm.


Hope that helps,
Magali

On 20/05/13 07:30, Guillermo Marco Puche wrote:
> Hello dear developers,
>
> I would like to add some information from Gene Ontology DB (
> http://www.geneontology.org/) as a VEP plugin.
>
> I've been looking Ensembl API and it doesn't seem to support any
> information form GO. Correct me if I'm wrong.
>
> The bad thing about that is that GO API seems very tricky to me.
> http://www.geneontology.org/GO.database.shtml#perl
>
> If you confirm me that Ensembl has nothing to do to query GO I'll go
> into Gene Ontology forums or mailing list to ask more about the GO API.
>
> Thank you.
>
> Best regards,
> Guillermo.
>
>
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