[ensembl-dev] VEP Ensembl & Gene Ontology

[Guillermo Marco Puche]

Hello Magali,

If i'm not wrong I should get all that information from Transcript 
object inside a VEP plugin.

Best regards,
Guillermo.

On 05/20/2013 10:15 AM, Magali wrote:
> Hi Guillermo,
>
> Ensembl imports the GO annotations every release, in an ensembl 
> compatible schema.
> We then add available GO symbols as external references for translations.
> These are represented on the web page in the 'Ontology graph' and 
> 'Ontology table' tab for transcripts with translations.
> http://www.ensembl.org/Homo_sapiens/Transcript/Ontology/Image?db=core;g=ENSG00000125871;r=20:17949556-17971765;t=ENST00000377710
>
> This is supported as part of our core API, using the module 
> OntologyTermAdaptor and OntologyTerm.
>
>
> Hope that helps,
> Magali
>
> On 20/05/13 07:30, Guillermo Marco Puche wrote:
>> Hello dear developers,
>>
>> I would like to add some information from Gene Ontology DB ( 
>> http://www.geneontology.org/) as a VEP plugin.
>>
>> I've been looking Ensembl API and it doesn't seem to support any 
>> information form GO. Correct me if I'm wrong.
>>
>> The bad thing about that is that GO API seems very tricky to me. 
>> http://www.geneontology.org/GO.database.shtml#perl
>>
>> If you confirm me that Ensembl has nothing to do to query GO I'll go 
>> into Gene Ontology forums or mailing list to ask more about the GO API.
>>
>> Thank you.
>>
>> Best regards,
>> Guillermo.
>>
>>
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