[ensembl-dev] Orthologous between plants and mammals

[Eduardo Andrés León]

Thank to both of you for your quick answer !!! . 

I will let you know . I'll start by Arabidopsis <=> mouse orthologous

Regards

On 13 May 2013, at 13:22, "Arnaud Kerhornou" <arnaud at ebi.ac.uk> wrote:

> Hi Eduardo,
> 
> Yes, both Arabidopsis and human are in the pan homology database, but also we also holds human, along with a few other metazoan model organisms in the plants compara database,
> 
> e.g. a gene tree with both human and arabidopsis
> http://plants.ensembl.org/Arabidopsis_thaliana/Gene/Compara_Ortholog?g=AT1G01140;r=1:64166-67625
> 
> Arnaud
> 
> On 13/05/2013 12:14, Anne Parker wrote:
>> Ensembl Plants has a "pan-taxonomic" compara database with selected vertebrate species such as human and mouse. See the full list here:
>> 
>> http://plants.ensembl.org/Arabidopsis_thaliana/Gene/PanComparaSpecies?g=AT3G52430;r=3:19431371-19434403;t=AT3G52430.1
>> 
>> Cheers
>> 
>> Anne
>> 
>> 
>> On 13 May 2013, at 12:08, Eduardo Andrés León <eandres at cnio.es> wrote:
>> 
>>> Dear all,
>>> I was wondering if it's possible to look for orthologous genes between very far species like arabidopsis and some mammals.
>>> 
>>> I can't find Arabidopsis in ensembl compara and I cant find mammals in the ensembl plants database.
>>> 
>>> So any idea ?
>>> 
>>>  Thanks in advance.
>>> 
>>> 
>>> ===================================================
>>> Eduardo Andrés León
>>> Tlfn: (+34) 91 732 80 00 / 91 224 69 00 (ext 5054/3063)
>>> e-mail: eandres at cnio.es        Fax: (+34) 91 224 69 76
>>> Unidad de Bioinformática       Bioinformatics Unit
>>> Centro Nacional de Investigaciones Oncológicas
>>> C.P.: 28029                Zip Code: 28029
>>> C/. Melchor Fernández Almagro, 3    Madrid (Spain)
>>> http://bioinfo.cnio.es	http://bioinfo.cnio.es/people/eandres
>>> ===================================================
>>> 
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>> 
>> 
>> 
>> 
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> 
> 
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===================================================
Eduardo Andrés León
Tlfn: (+34) 91 732 80 00 / 91 224 69 00 (ext 5054/3063)
e-mail: eandres at cnio.es        Fax: (+34) 91 224 69 76
Unidad de Bioinformática       Bioinformatics Unit
Centro Nacional de Investigaciones Oncológicas
C.P.: 28029                Zip Code: 28029
C/. Melchor Fernández Almagro, 3    Madrid (Spain)
http://bioinfo.cnio.es	http://bioinfo.cnio.es/people/eandres
===================================================

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