[ensembl-dev] VEP error: Forked process failed.

[Guillermo Marco Puche]

Hello,

I've started to recently having problems with VEP script while using 
different plugins (most of them own plugins).

2013-05-13 13:59:44 - Connected to core version 71 database and variation version 71 database
2013-05-13 13:59:44 - Loaded plugin: vcf_input
2013-05-13 13:59:44 - Loaded plugin: biobase
2013-05-13 13:59:44 - Loaded plugin: aa_grantham_distance
2013-05-13 13:59:44 - Loaded plugin: flanking_sequence
2013-05-13 13:59:44 - Loaded plugin: Condel
2013-05-13 13:59:44 - Output fields redefined (37 defined)
2013-05-13 13:59:44 - Starting...
2013-05-13 13:59:45 - Read 3888 variants into buffer
2013-05-13 13:59:54 - Reading transcript data from cache and/or database
[===============================================]  [ 100% ]
2013-05-13 14:02:38 - Retrieved 6463 transcripts (0 mem, 0 cached, 13743 DB, 7280 duplicates)
2013-05-13 14:02:38 - Calculating consequences
[===================================>           ]   [ 78% ]
ERROR: Forked process failed


I'm not getting any other error message. So I cannot debug properly. I 
thought my plugins were OK but it's seems they don't. I think the 
problem occurs when I use "aa_grantham_distance plugin" together with 
"flanking_sequence". I've no idea what could be causing this.

I'm running VEP on verbose mode but I can't get any usefull information. 
How could I debug that?

Best regards,
Guillermo.

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