[ensembl-dev] cds regions from rest api

[Brett Thomas]

Whoops - sorry to bother - thought I tried that. Thanks!


On Wed, Jul 24, 2013 at 4:49 AM, Andy Yates <ayates at ebi.ac.uk> wrote:

> Hi Brett,
>
> Why of course. The feature endpoint can query for a region by a stable ID
> and you can request the feature type CDS e.g.
>
> http://beta.rest.ensembl.org/feature/id/ENST00000544455.gff3?feature=cds
>
> It's not perfect but it will give you the coding boundaries of a
> transcript.
>
> Andy
>
> Andrew Yates                   Ensembl Core Software Project Leader
> EMBL-EBI                       Tel: +44-(0)1223-492538
> Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
> Cambridge CB10 1SD, UK         http://www.ensembl.org/
>
> On 23 Jul 2013, at 22:11, Brett Thomas <bthomas at atgu.mgh.harvard.edu>
> wrote:
>
> > Hi dev -- quick question here. Is there a way to get a list of coding
> regions for a gene from the rest API? I've been using it to collect the set
> of exon boundaries for a gene, but I want to restrict it to only coding
> regions
> >
> > Thanks!
> > Brett
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