[ensembl-dev] cds regions from rest api

[Andy Yates]

Not a problem glad to help :)

Andy

On 24 Jul 2013, at 15:39, Brett Thomas <bthomas at atgu.mgh.harvard.edu> wrote:

> Whoops - sorry to bother - thought I tried that. Thanks! 
> 
> 
> On Wed, Jul 24, 2013 at 4:49 AM, Andy Yates <ayates at ebi.ac.uk> wrote:
> Hi Brett,
> 
> Why of course. The feature endpoint can query for a region by a stable ID and you can request the feature type CDS e.g.
> 
> http://beta.rest.ensembl.org/feature/id/ENST00000544455.gff3?feature=cds
> 
> It's not perfect but it will give you the coding boundaries of a transcript.
> 
> Andy
> 
> Andrew Yates                   Ensembl Core Software Project Leader
> EMBL-EBI                       Tel: +44-(0)1223-492538
> Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
> Cambridge CB10 1SD, UK         http://www.ensembl.org/
> 
> On 23 Jul 2013, at 22:11, Brett Thomas <bthomas at atgu.mgh.harvard.edu> wrote:
> 
> > Hi dev -- quick question here. Is there a way to get a list of coding regions for a gene from the rest API? I've been using it to collect the set of exon boundaries for a gene, but I want to restrict it to only coding regions
> >
> > Thanks!
> > Brett
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