[ensembl-dev] cds regions from rest api

[Andy Yates]

Hi Brett,

Why of course. The feature endpoint can query for a region by a stable ID and you can request the feature type CDS e.g.

http://beta.rest.ensembl.org/feature/id/ENST00000544455.gff3?feature=cds

It's not perfect but it will give you the coding boundaries of a transcript.

Andy

Andrew Yates                   Ensembl Core Software Project Leader
EMBL-EBI                       Tel: +44-(0)1223-492538
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensembl.org/

On 23 Jul 2013, at 22:11, Brett Thomas <bthomas at atgu.mgh.harvard.edu> wrote:

> Hi dev -- quick question here. Is there a way to get a list of coding regions for a gene from the rest API? I've been using it to collect the set of exon boundaries for a gene, but I want to restrict it to only coding regions 
> 
> Thanks! 
> Brett
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