[ensembl-dev] Failed to add BAM tracks, .bai present, .bam sorted, need detailed error codes

Beth Yates bp1 at sanger.ac.uk
Fri Nov 2 11:13:25 GMT 2012

Hi Andrew,

I've just checked the log files and found this

"Expected Partial Content 206. 
404 Not Found

Can't get data socket for 

I seem to remember that the last time we saw this error it was a problem 
with the set up of the server hosting the BAM file. Also ensembl 
requires a BAM file to be sorted before we will upload it so if one of 
your files is not sorted you will not be able to display it even when 
you have fixed the problem with the file server.

Hope this helps you debug your problem, regards,

On 02/11/12 11:02, Andrew Tikhonov wrote:
> Dear Ens-dev
> 	I'm trying to add these 2 BAM files as BAM tracks and getting errors. the .bai files are there. One of the files is assumed to be unsorted. But I'm not entirely sure as this was brought to us. The sorted files was sorted, but it doesn't display as well. Could someone please check the logs to see the detailed reason the files fail to load/add.
> 	http://www.ebi.ac.uk/Tools/rcloud/downloads/HG00096.bam
> 	http://www.ebi.ac.uk/Tools/rcloud/downloads/22_sorted.bam
> 	Thanks a lot in advance.
> Regards,
> Andrew
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