[ensembl-dev] Vraint Effect Predictor

[Fiona Cunningham]

Dear Sunita,

We have also just released code for an Ensembl Virtual Machine which has
all the code for the API and VEP already installed. Maybe this will be
easier for you. For instructions see here:
http://www.ensembl.org/info/data/virtual_machine.html

and announcement here:
http://www.ensembl.info/blog/2012/05/10/ensembl-67-has-been-released/

Best wishes,

Fiona

-----------------------------------------------------------------------------------
Fiona Cunningham
Ensembl Coordinator, Ensembl Variation Project Leader.
EMBL-EBI, Genome Campus, Hinxton, UK
www.ensembl.org || www.lrg-sequence.org
fiona at ebi.ac.uk   || t: +44 1223 494612


On 1 June 2012 09:32, Will McLaren <wm2 at ebi.ac.uk> wrote:

> Hello Sunita,
>
> It looks like you are using a Windows machine; the VEP is not well tested
> on Windows and I'm not sure if the installer script will work.
>
> You may still be able to get the VEP running by installing the Ensembl API
> manually; see here for details:
>
> http://www.ensembl.org/info/docs/api/api_installation.html
>
> You will need the ensembl, ensembl-variation and ensembl-functgenomics
> modules installed.
>
> Hope this helps!
>
> Cheers
>
> Will
>
> On 31 May 2012 17:17, Koul, Sunita <sunita at pathology.wustl.edu> wrote:
>
>>  Hi,
>>
>> I am trying to install the perl API for Variant Effect Predictor.
>>
>> When I run the INSTALL.pl (as per instructions in
>> http://useast.ensembl.org/info/docs/variation/vep/vep_script.html#run_install
>> )
>>
>>
>>
>> I am getting the following error
>>
>> Testing VEP script
>>
>> ERROR: Testing VEP script failed with the following error
>>
>> Can't locate Bio/EnsEMBL/Variation/Utils/Sequence.pm in @INC (@INC
>> contains: E:/
>>
>> Perl/variant_effect_predictor C:/Perl/site/lib C:/Perl/lib .) at
>> variant_effect_
>>
>> predictor.pl line 40.
>>
>> BEGIN failed--compilation aborted at variant_effect_predictor.pl line 40.
>>
>>
>>
>>
>>
>> Any idea why I am getting this error
>>
>>
>>
>>
>>
>> Sunita
>>
>>
>>
>>
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>
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