[ensembl-dev] Vraint Effect Predictor

[Will McLaren]

Hello Sunita,

It looks like you are using a Windows machine; the VEP is not well tested
on Windows and I'm not sure if the installer script will work.

You may still be able to get the VEP running by installing the Ensembl API
manually; see here for details:

http://www.ensembl.org/info/docs/api/api_installation.html

You will need the ensembl, ensembl-variation and ensembl-functgenomics
modules installed.

Hope this helps!

Cheers

Will

On 31 May 2012 17:17, Koul, Sunita <sunita at pathology.wustl.edu> wrote:

>  Hi,
>
> I am trying to install the perl API for Variant Effect Predictor.
>
> When I run the INSTALL.pl (as per instructions in
> http://useast.ensembl.org/info/docs/variation/vep/vep_script.html#run_install
> )
>
>
>
> I am getting the following error
>
> Testing VEP script
>
> ERROR: Testing VEP script failed with the following error
>
> Can't locate Bio/EnsEMBL/Variation/Utils/Sequence.pm in @INC (@INC
> contains: E:/
>
> Perl/variant_effect_predictor C:/Perl/site/lib C:/Perl/lib .) at
> variant_effect_
>
> predictor.pl line 40.
>
> BEGIN failed--compilation aborted at variant_effect_predictor.pl line 40.
>
>
>
>
>
> Any idea why I am getting this error
>
>
>
>
>
> Sunita
>
>
>
>
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