[ensembl-dev] local compara

[Dan Staines]

Out of interest, how are you planning to load the additional Buchnera 
genomes?

On 01/10/2012 12:29 PM, Javier Herrero wrote:
> Dear Jean-Pierre
>
> To run the compara pipeline, you first need to set up your buchnera core
> dbs.
>
> Once you are done with that, you will have to install the
> ensembl-compara API and follow the instructions in the README files
> provided in either ensembl-compara/docs (new location) or
> ensembl-compara/script/pipeline/ (old location) to run the pipelines.
>
> After doing all this, you will be able to see the gene trees by pointing
> your web server to the new compara database.
>
> Kind regards
>
> Javier
>
> On 09/01/12 14:14, Gauthier Jean-Pierre wrote:
>> Hi all and Happy new year,
>>
>> After various complex (for me) episodes and with your help, I was
>> nearly successfull
>> in installing and running an Ensembl v64 bacterial mirror site (still
>> some bugs).
>> But I am not out of the wood yet.
>>
>> I now need to add some other buchnera species and run compara pipeline
>> with them.
>> I did not find Docs on how to install compara pipeline on my local
>> Ensembl
>> installation.
>> Are there some guidelines to do that?
>>
>> Jean-Pierre
>>
>>
>

-- 
Dan Staines, PhD               Ensembl Genomes Technical Coordinator
EMBL-EBI                       Tel: +44-(0)1223-492507
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/