[ensembl-dev] local compara

[Javier Herrero]

Dear Jean-Pierre

To run the compara pipeline, you first need to set up your buchnera core 
dbs.

Once you are done with that, you will have to install the 
ensembl-compara API and follow the instructions in the README files 
provided in either ensembl-compara/docs (new location) or 
ensembl-compara/script/pipeline/ (old location) to run the pipelines.

After doing all this, you will be able to see the gene trees by pointing 
your web server to the new compara database.

Kind regards

Javier

On 09/01/12 14:14, Gauthier Jean-Pierre wrote:
> Hi all and Happy new year,
>
> After various complex (for me) episodes and with your help, I was 
> nearly successfull
> in installing and running an Ensembl v64 bacterial mirror site (still 
> some bugs).
> But I am not out of the wood yet.
>
> I now need to add some other buchnera species and run compara pipeline
> with them.
> I did not find Docs on how to install compara pipeline on my local 
> Ensembl
> installation.
> Are there some guidelines to do that?
>
> Jean-Pierre
>
>

-- 
Javier Herrero, PhD
Ensembl Coordinator and Ensembl Compara Project Leader
European Bioinformatics Institute (EMBL-EBI)
Wellcome Trust Genome Campus, Hinxton
Cambridge - CB10 1SD - UK