[ensembl-dev] adding genomes

[Gauthier Jean-Pierre]

Hi Dan,

Thank's for answer.
Does that mean that I cannot build my own database, say with all existing
Buchnera genomes (many are coming) on my local installation?
Are there solutions within Ensembl (Geek for a Week, collaborations...?)
or do I have to find other ways to run my comparative analysis?

Regards
Jean-Pierre


Le 10/01/2012 21:06, Dan Staines a écrit :
>
>
> On 01/10/2012 12:51 PM, Gauthier Jean-Pierre wrote:
>> Le 10/01/2012 13:30, Dan Staines a écrit :
>>> Out of interest, how are you planning to load the additional Buchnera
>>> genomes?
>> My question was bad formulated, I also need guidelines to do that:
>> Adding gff files like in chado databases
>> OR
>> creating a new core database with my species
>
> Unfortunately, this is not something thats trivial. We load a lot of 
> data from GFF (not bacteria, which are loaded from EBI data archives), 
> but our scripts are generally aimed at internal use, and not something 
> we'd be comfortable supporting for general use by the public. I hope 
> this situation can change, but it requires a bit of non-trivial effort 
> on our part to make sure these work smoothly enough for the general 
> public.
>
> Having said that, I'm currently looking at loading some GFF for 
> bacterial genomes from another external source. If you can wait a 
> while, its possible that I can produce something more usable for them 
> that might also be of use for you.
>
> Best regards,
>
> Dan.
>


-- 
Gauthier Jean-Pierre.
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