[ensembl-dev] Feature request for VEP

[Will McLaren]

Hi Duarte,

Have you tried using --config [config_file]?

The settings in this file are loaded after vep.ini and so will trump
any that are set in the ini file.

Cheers

Will

On 30 August 2012 15:19, Duarte Molha <Duarte.Molha at ogt.co.uk> wrote:
> Dear Developers
>
>
>
> I was wondering if you have plans to implement a way of pointing to vep.ini
> files instead of always using the one stored in our VEP cache directory.
>
>
>
> I ask this because I have created a vep.ini file with all the configurations
> I require to run most of my projects, however I would like to either ignore
> that file or at least specify another vep config file in some situations
> (especially if running data from another species).
>
>
>
> Since all my cache (for all species in under the same cache folder ), when I
> tell the script to use the cache it always assumes I want to use the vep.ini
> file on the root of the folder.
>
>
>
> Do you guys have anything on the pipeline to address this issue or know of a
> quick workaround this limitation?
>
>
>
> Best regards
>
>
>
> Duarte Molha
>
>
>
>
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