[ensembl-dev] Feature request for VEP

[Duarte Molha]

No I did not! Thank you very much... Sorry to bother you with something I should have noticed before :S

Cheers

Duarte



-----Original Message-----
From: dev-bounces at ensembl.org [mailto:dev-bounces at ensembl.org] On Behalf Of Will McLaren
Sent: 30 August 2012 15:40
To: Ensembl developers list
Subject: Re: [ensembl-dev] Feature request for VEP

Hi Duarte,

Have you tried using --config [config_file]?

The settings in this file are loaded after vep.ini and so will trump any that are set in the ini file.

Cheers

Will

On 30 August 2012 15:19, Duarte Molha <Duarte.Molha at ogt.co.uk> wrote:
> Dear Developers
>
>
>
> I was wondering if you have plans to implement a way of pointing to 
> vep.ini files instead of always using the one stored in our VEP cache directory.
>
>
>
> I ask this because I have created a vep.ini file with all the 
> configurations I require to run most of my projects, however I would 
> like to either ignore that file or at least specify another vep config 
> file in some situations (especially if running data from another species).
>
>
>
> Since all my cache (for all species in under the same cache folder ), 
> when I tell the script to use the cache it always assumes I want to 
> use the vep.ini file on the root of the folder.
>
>
>
> Do you guys have anything on the pipeline to address this issue or 
> know of a quick workaround this limitation?
>
>
>
> Best regards
>
>
>
> Duarte Molha
>
>
>
>
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