[ensembl-dev] Enesembl 66 - BLAST error

[Beth Yates]

Hi Sounder,

If you left click on an [A] a link and select 'Copy Link location' then 
paste the link into a text file does it have all the parameters set 
correctly? The bit of code generating these links is in 
perl/multi/blastview  search for "my $A_link" somewhere around line 2328 
this is the part of the code you need to be debugging if the link is not 
being generated correctly.

If it's a case of the link being created correctly but the parameters 
being removed when you go to the page I'm not sure what would be causing 
that.\

Hope this is of some help,
Beth

On 20/04/12 15:51, Soundappan, Sounderaraj (Ext) wrote:
> Hi Anne,
>          This is done automatically , If I click on say Alignments (A) in the blast's result screen (last screenshot0 , it should give the proper display. Also in mysql dbfor the corresponding ticket , there is only one row.
>          So controlling query of blast_ticket is done by the ensemble and when we click on A,S etc., it should retrieve proper results.
>
> Regards,
> Sounder.
>
>
> -----Original Message-----
> From: dev-bounces at ensembl.org [mailto:dev-bounces at ensembl.org] On Behalf Of Anne Parker
> Sent: Friday, April 20, 2012 4:44 PM
> To: Ensembl developers list
> Cc: Wahl, Ralf; Jaykumar, Mahesh (Ext)
> Subject: Re: [ensembl-dev] Enesembl 66 - BLAST error
>
> Hi Sounder
>
> The issue is not the object query per se, but the subsequent attempt to get all the hit information back. Looking again at your screeshots, it would appear that your BLAST query is returning too many hits, which is why your server is running out of memory. Try submitting a new ticket with parameters that return fewer results.
>
> Cheers
>
> Anne
>
>
> On 20 Apr 2012, at 15:38, Soundappan, Sounderaraj (Ext) wrote:
>
>> Hi Anne,
>>          Yes, I get a hit from mysql db...
>> ===
>> SELECT object FROM   blast_ticket WHERE  ticket = 'BLA_CT6pYNm9S';
>> 1 row in set (0.00 sec)
>> ====
>>
>> Regards,
>> Sounder.
>>
>>
>> -----Original Message-----
>> From: dev-bounces at ensembl.org [mailto:dev-bounces at ensembl.org] On Behalf Of Anne Parker
>> Sent: Friday, April 20, 2012 12:28 PM
>> To: Ensembl developers list
>> Cc: Wahl, Ralf; Jaykumar, Mahesh (Ext)
>> Subject: Re: [ensembl-dev] Enesembl 66 - BLAST error
>>
>> Hi Sounder
>>
>> Your document says at the end that the ticket retrieval process is throwing an out-of-memory error - have you tried manually checking this query using a MySQL client?
>>
>> Anne
>>
>>
>> On 20 Apr 2012, at 08:42, Soundappan, Sounderaraj (Ext) wrote:
>>
>>> Sending again, after subscription ...
>>>
>>> From: Soundappan, Sounderaraj (Ext)
>>> Sent: Friday, April 20, 2012 9:35 AM
>>> To: 'dev at ensembl.org'
>>> Cc: Wahl, Ralf; Jaykumar, Mahesh (Ext)
>>> Subject: Enesembl 66 - BLAST error
>>>
>>> Hi,
>>>    We are working with ENSEMBL release 66 setup.We get the error ,page not found , out of memory error when we click on alignments, sequences for BLAST  searches on protein/DNA sequences.
>>>   Atatched is the word document with the steps and errors.Request your help on the same.
>>>
>>>
>>> Regards,
>>> Sounder.
>>> <problem-docx.zip>_______________________________________________
>>> Dev mailing list    Dev at ensembl.org
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>>> Ensembl Blog: http://www.ensembl.info/
>> Anne Parker
>> Ensembl Web Production Manager
>> http://www.ensembl.org
>>
>>
>>
>>
>> _______________________________________________
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>> _______________________________________________
>> Dev mailing list    Dev at ensembl.org
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> Anne Parker
> Ensembl Web Production Manager
> http://www.ensembl.org
>
>
>
>
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
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> Ensembl Blog: http://www.ensembl.info/
>
> _______________________________________________
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