[ensembl-dev] Ontologyadaptors from latest enemblgenomes release

[Arnaud Kerhornou]

Hi Simon,

Thanks for reporting this issue, I have fixed it in the EnsemblGenomes 
63 branch,
so if you check-out Ensembl API using the branch called 
'branch-ensemblgenomes-10-63', it should now work.
For the coming release of Ensembl Genomes, we'll make sure it is 
possible to use the Ensembl branch-64

Re. the warning issue, don't worry about it, we'll see if we can fix 
that in 64.

Let me know if you still having problems loading the ontology database 
afterwards,

cheers,
Arnaud

On 08/09/2011 16:54, simon andrews (BI) wrote:
> A while back I reported a problem with getting an Ontology adaptor through the Ensemblgenomes API.  With the latest release the problem seems to have reared its head again.
>
> http://lists.ensembl.org/pipermail/dev/2010-December/000544.html
>
> I see that the naming of the ontology database has changed again to include both the release and software versions, so is another fix in the API required?  I've got it working by manually entering the database in the registry but it would be good to have it work automatically.
>
> Also I seem to be getting a spurious warning about the software and database versions not matching (10 vs 63), which I guess is another parsing bug from the updated ontology database name.
>
> Cheers
>
> Simon.
>
>
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