[ensembl-dev] variant_effect_predictor.pl

[Graham Ritchie]

Hi Sabrina,

In the latest version you can turn this behaviour on by using the --check_existing command line option.

Cheers,

Graham


On 24 Nov 2011, at 16:53, srodriguez wrote:

> Dear Ensembl team,
> 
> In order to annotate potentially new SNPs, I used to use snp_effect_predictor.pl which provides the rsID name (if existing) in the "Existing_variation" column.
> 
> Now that I am using variant_effect_predictor.pl (according to the new Ensembl version), it seems that I do not get the rsID anymore in the "Existing_variation".
> 
> Have you noticed this problem before?
> 
> Thanks in advance for your answer.
> 
> Best regards,
> 
> Sabrina.
> 
> 
> 
> *******************************************
> Sabrina Rodriguez
> Bioinformatics
> Département de Génétique animale
> Unité GABI
> Domaine de Vilvert
> 78532 Jouy en josas
> 
> +33 (0) 1 34 65 29 53
> 
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> List admin (including subscribe/unsubscribe): http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/