[ensembl-dev] Ensembl genes 62 GO external references

[Rhoda Kinsella]

Hi Christian
The three Go domains have all been merged in BioMart for the Ensembl  
62 release. The "(bp)" at the end of the attribute names is a text  
error on the interface and will be removed for the next release. If  
you select the GO domain attribute you will be able to see what domain  
your GO ID corresponds to. You can follow the changes and additions to  
the BioMart databases on the Ensembl news section after each release:

http://www.ensembl.org/info/website/news/

I hope that helps
Regards
Rhoda


On 17 May 2011, at 11:46, Christian Pérez-Llamas wrote:

> Hello,
>
> Before the 62 release for the homo sapiens dataset there were  
> external references for GO BP, MF and CL separately. But now I only  
> see external references for BP, or at least this I guess as all the  
> attribute names end with "(bp)". Have they been merged into one and  
> then the (bp) prefix is a mistake or MF and CL are missing ?
>
> I was looking in the mailing archive for the lasts months and I  
> didn't find anything related, sorry if it was already asked for, I  
> just joined the mailing list.
>
> And the last question, does "GOSlim GOA" refer to the generic GO  
> slim developed by GO consortium in http://www.geneontology.org/GO_slims/goslim_generic.obo 
>  ?
>
> Thanks,
> Christian Perez-Llamas
>
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Rhoda Kinsella Ph.D.
Ensembl Bioinformatician,
European Bioinformatics Institute (EMBL-EBI),
Wellcome Trust Genome Campus,
Hinxton
Cambridge CB10 1SD,
UK.