[ensembl-dev] Chromosome ideogram

[Bert Overduin]

This information is indeed not available in BioMart.

Cheers,
Bert

On Wed, May 11, 2011 at 3:22 PM, ian Longden <ianl at ebi.ac.uk> wrote:

> This data is stored in the Karyotype table in Ensembl. Biomart is gene
> centric so may not have this data as the karyotype data is based  on
> seq regions (chromosomes in this case)
> I am not an Biomart expert but i could not see anything obvious in
> martview.
>
> -Ian.
>
> On Wed, May 11, 2011 at 3:13 PM, Beat Wolf <wolf at fryx.ch> wrote:
> > Hello,
> >
> > i'm using ensembl in an application i'm writing. It's a java application
> and
> > for that reason i access the ensembl data trough BioMart.
> >
> > Now my question. Ensembl has those chromosome ideograms that are shown on
> the
> > website. I would love to integrate such a ideogram in my application, but
> i
> > didn't find a way to access the needed data trough biomart. I'm a
> computer
> > scientist, so i might simply not know the right terminology for what i'm
> > searching for.
> >
> > Thank you very much for your help
> >
> > Beat Wolf
> >
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>
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-- 
Bert Overduin, Ph.D.
Vertebrate Genomics Team

EMBL - European Bioinformatics Institute
Wellcome Trust Genome Campus
Hinxton, Cambridge CB10 1SD
United Kingdom

http://www.ebi.ac.uk/~bert

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