[ensembl-dev] Chromosome ideogram

ian Longden ianl at ebi.ac.uk
Wed May 11 15:22:39 BST 2011

This data is stored in the Karyotype table in Ensembl. Biomart is gene
centric so may not have this data as the karyotype data is based  on
seq regions (chromosomes in this case)
I am not an Biomart expert but i could not see anything obvious in martview.


On Wed, May 11, 2011 at 3:13 PM, Beat Wolf <wolf at fryx.ch> wrote:
> Hello,
> i'm using ensembl in an application i'm writing. It's a java application and
> for that reason i access the ensembl data trough BioMart.
> Now my question. Ensembl has those chromosome ideograms that are shown on the
> website. I would love to integrate such a ideogram in my application, but i
> didn't find a way to access the needed data trough biomart. I'm a computer
> scientist, so i might simply not know the right terminology for what i'm
> searching for.
> Thank you very much for your help
> Beat Wolf
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