[ensembl-dev] Chromosome ideogram

[Damian Smedley]

Hi,

The Ensembl BioMart has a karyotype dataset and the gene dataset has the
genes mapped to karyotype bands so you should be able to get what you need
by querying those somehow.

Cheers
Damian


On Wed, May 11, 2011 at 3:22 PM, ian Longden <ianl at ebi.ac.uk> wrote:

> This data is stored in the Karyotype table in Ensembl. Biomart is gene
> centric so may not have this data as the karyotype data is based  on
> seq regions (chromosomes in this case)
> I am not an Biomart expert but i could not see anything obvious in
> martview.
>
> -Ian.
>
> On Wed, May 11, 2011 at 3:13 PM, Beat Wolf <wolf at fryx.ch> wrote:
> > Hello,
> >
> > i'm using ensembl in an application i'm writing. It's a java application
> and
> > for that reason i access the ensembl data trough BioMart.
> >
> > Now my question. Ensembl has those chromosome ideograms that are shown on
> the
> > website. I would love to integrate such a ideogram in my application, but
> i
> > didn't find a way to access the needed data trough biomart. I'm a
> computer
> > scientist, so i might simply not know the right terminology for what i'm
> > searching for.
> >
> > Thank you very much for your help
> >
> > Beat Wolf
> >
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