[ensembl-dev] Display BAM data against NCBI36 human genome

[Andy Yates]

Hi Fedor,

Have you considered upgrading the v54 schema to v61? All the patches are available from the ensembl/sql directory & can be applied using the ensembl/misc-scripts/schema_patch.pl script.

Best regards,

Andy

On 17 Mar 2011, at 13:39, Fedor Gusev wrote:

> Hello.
> 
> I managed to install a local copy of Ensembl (release-54, the last to
> have NCBI 36). And I want to add custom BAM tracks.
> 
> The problem is: release 54 seems not to support BAMs. Still
> 1000genomes projects can display BAMs against NCBI36.
> 
> I see two ways now:
> 1) get the latest release of Ensembl and upload NCBI36. But the
> database schema changed too much since release 54.
> 2) modify release 54 to support BAM custom tracks.
> 
> While I can deal with latter, I am wondering:
> a) if the first option is possible,
> b) how 1000genomes people achieved BAMs and NCBI36 at the same time.
> 
> Thanks in advance.
> 
> -- 
> Kind regards,
> Fedor Gusev.
> 
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-- 
Andrew Yates                   Ensembl Genomes Engineer
EMBL-EBI                       Tel: +44-(0)1223-492538
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/