[ensembl-dev] Display BAM data against NCBI36 human genome

[Fedor Gusev]

Thanks a lot. That worked great. Except that I had to fix some of the patches.

On Thu, Mar 17, 2011 at 4:57 PM, Andy Yates <ayates at ebi.ac.uk> wrote:
> Hi Fedor,
>
> Have you considered upgrading the v54 schema to v61? All the patches are available from the ensembl/sql directory & can be applied using the ensembl/misc-scripts/schema_patch.pl script.
>
> Best regards,
>
> Andy
>
> On 17 Mar 2011, at 13:39, Fedor Gusev wrote:
>
>> Hello.
>>
>> I managed to install a local copy of Ensembl (release-54, the last to
>> have NCBI 36). And I want to add custom BAM tracks.
>>
>> The problem is: release 54 seems not to support BAMs. Still
>> 1000genomes projects can display BAMs against NCBI36.
>>
>> I see two ways now:
>> 1) get the latest release of Ensembl and upload NCBI36. But the
>> database schema changed too much since release 54.
>> 2) modify release 54 to support BAM custom tracks.
>>
>> While I can deal with latter, I am wondering:
>> a) if the first option is possible,
>> b) how 1000genomes people achieved BAMs and NCBI36 at the same time.
>>
>> Thanks in advance.
>>
>> --
>> Kind regards,
>> Fedor Gusev.
>>
>> _______________________________________________
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>> Dev at ensembl.org
>> http://lists.ensembl.org/mailman/listinfo/dev
>
> --
> Andrew Yates                   Ensembl Genomes Engineer
> EMBL-EBI                       Tel: +44-(0)1223-492538
> Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
> Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/
>
>
>
>
>



-- 
Kind regards,
Fedor Gusev.