[ensembl-dev] Problem with BioPerl

[Stuart Meacham]

Hi Vipin,

Maybe some kind soul is willing to answer your question but perhaps you 
are better off asking on one of the BioPerl mailing lists (this is the 
mailing list for Ensembl related questions). Check out:

http://www.bioperl.org/wiki/Mailing_lists

For BioPerl support lists.

Cheers

Stuart

On 01/06/11 12:52, Vipin Singh wrote:
> Hi, I am new to BioPerl. I am running a simple  script (see below) on
> windows to fetch sequence from swissprot.
>
>
> *use Bio::Perl;*
> *# this script will only work with an internet connection*
> *# on the computer it is run on*
> *$seq_object = get_sequence('swiss',"ROA1_HUMAN");*
> *write_sequence(">roa1.fasta",'fasta',$seq_object);*
>
> the script was given in one of the examples at Bioperl.org.
>
> This is the output I get ... please guide.
>
> Y*our system does not have one of LWP, HTTP::Request::Common, IO::String
> installed so the DB retrieval method is not available.*
> *Full error message is:*
> *
> *
> * at C:/Perl/site/lib/Bio/Perl.pm line 476*
> *        Bio::Perl::get_sequence('swiss', 'ROA1_HUMAN') called at
> getseq.pl <http://getseq.pl> line 4*
>
>   I have restalled BioPerl several times but to no avail.
> Please help.
>
> --
> Vipin Singh,
> Senior Research Fellow,
> Centre for Cellular and Molecular Biology,
> Hyderabad - 500007
> India.
> contact - 91-040-27192778
>
>
>
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> List admin (including subscribe/unsubscribe): http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/