[ensembl-dev] Problem with BioPerl

[Animesh Sharma]

Hi Vipin,
I guess you need to install the three mentioned modules (* LWP,
HTTP::Request::Common, IO::String * ) before you can run this script... they
are available at http://search.cpan.org/ .
Regards,
Animesh

--------------------------"The Answer Lies In The
Genome"--------------------------



On Wed, Jun 1, 2011 at 1:52 PM, Vipin Singh <ashvip at gmail.com> wrote:

> Hi, I am new to BioPerl. I am running a simple  script (see below) on
> windows to fetch sequence from swissprot.
>
>
> *use Bio::Perl;*
> *# this script will only work with an internet connection*
> *# on the computer it is run on*
> *$seq_object = get_sequence('swiss',"ROA1_HUMAN");*
> *write_sequence(">roa1.fasta",'fasta',$seq_object);*
>
> the script was given in one of the examples at Bioperl.org.
>
> This is the output I get ... please guide.
>
> Y*our system does not have one of LWP, HTTP::Request::Common, IO::String
> installed so the DB retrieval method is not available.*
> *Full error message is:*
> *
> *
> * at C:/Perl/site/lib/Bio/Perl.pm line 476*
> *        Bio::Perl::get_sequence('swiss', 'ROA1_HUMAN') called at
> getseq.pl line 4*
>
>  I have restalled BioPerl several times but to no avail.
> Please help.
>
> --
> Vipin Singh,
> Senior Research Fellow,
> Centre for Cellular and Molecular Biology,
> Hyderabad - 500007
> India.
> contact - 91-040-27192778
>
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