[ensembl-dev] local copy of ensembl for mouse and human core data

[Bethan Pritchard]

Hi Hardip,

The directory listing you have looks correct to me - the only thing you 
should check is that you have apache2 installed and the correct path to 
it set in your SiteDefs.pm file (grep for '$APACHE_DIR' to check this). 
I'll get the website documentation updated to reflect the changes.

Best regards,
Beth

Hardip Patel wrote:
> Hi
>
> I am trying to set up local copy of the ensembl for human and mice 
> core database. I have managed to install all prerequisites and going 
> through the installation of software. In the help documentation, it 
> says that my server-root directory listing should look as follows 
> after cvs checkout.
>
> *apache2/
> * bioperl-live/
> biomart-perl/
> conf/
> ensembl/
> ensembl-compara/
> ensembl-draw/
> ensembl-external/
> ensembl-variation/
> htdocs/
> modules/
> perl/
> public-plugins/
> utils/
>
> However my server-root directory listing is something different than 
> this (as below). The difference is highlighted in bold.
>
> biomart-perl
> bioperl-live
> *cbuild
> *conf
> *ctrl_scripts
> *ensembl
> ensembl-compara
> ensembl-draw
> ensembl-external
> *ensembl-functgenomics
> *ensembl-variation
> htdocs
> modules
> perl
> public-plugins
> utils
>
> Could you please let me know if this is something to worry about 
> everything I need is there and documentation on the website is little 
> out of date?
>
> Kind regards
> -- 
> Hardip R. Patel, PhD
> Bioinformatician, Molecular Genetics Division,
> Victor Chang Cardiac Research Institute,
> Darlinghurst, NSW – 2010, Australia
> (W): +61 – 2 – 9295 8611
> (M): 0449 180 715
>
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