[ensembl-dev] Dev Digest, Vol 13, Issue 26

[Steve Moss]

Hi Carn,

I'm not sure, but I have a feeling this may involve the
Bio::Ensembl::OntologyTerm class? I should imagine you need to search
Ensembl's GO terms for genes that match the 'histone h2a histone cluster 1'
 class?

I'll do some investigating, but perhaps someone else may be able to clarify
sooner?

See this link for some more information
http://www.ensembl.org/info/docs/Doxygen/core-api/classBio_1_1EnsEMBL_1_1OntologyTerm.html

Cheers,

Steve

On 19 July 2011 23:56, <dev-request at ensembl.org> wrote:

> ------------------------------
>
> Message: 2
> Date: Tue, 19 Jul 2011 18:43:18 +0100
> From: Carn? Draug <carandraug+dev at gmail.com>
> Subject: [ensembl-dev] searchin on ensembl with perl API
> To: dev at ensembl.org
> Message-ID:
>        <CAPOrs_1LWLSWudzY8vt-CrA6J8NX1BW5tYm1JMHb76XxY+9hJg at mail.gmail.com
> >
> Content-Type: text/plain; charset=ISO-8859-1
>
> Hi
>
> I can't find on the tutorials any info on how to something that I hope
> will be very simple.
>
> On the website, I can enter a query term and I get a list of gene and
> transcripts ids. I'd like to make that search with the perl API.
> However, I can't find any information on to do it on the tutorials.
>
> Also couldn't find anything when searching for 'query' on the list of
> the core API methods or in the mailing list (by the way, the ensembl
> mailing list archive is not searchable, I had to rely on google. It
> would probably be nice to do that).
>
> Could someone show me how to do that or point to the right package or
> documentation?
>
> Thanks in advance,
> Carn? Draug
>


-- 
Kindest regards,

Steve Moss
http://stevemoss.ath.cx
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