[ensembl-dev] Polyphen scores

[Graham Ritchie]

Hi Chris,

It is indeed the value from the pph2_prob column, extracted after we have run the weka classifier.

Cheers,

Graham


On 16 Aug 2011, at 11:06, cj5 at sanger.ac.uk wrote:

> Hi ,
> Just wanted to what is provided by TranscriptVariationAllele::polyphen_score
> 
> Is this the pph2_prob 'classifier probability of the variation being
> damaging', as described here ?:
> http://genetics.bwh.harvard.edu/pph2/dokuwiki/appendix_a
> 
> Many Thanks
> 
> -- 
> Chris Joyce
> Team 136, Medical Sequencing
> Wellcome Trust Sanger Institute
> Tel: 01223 834244 Ext. 6859
> 
> 
> 
> 
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> List admin (including subscribe/unsubscribe): http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/