[ensembl-dev] Cufflinks to Ensembl ?
Karyn Megy
kmegy at ebi.ac.uk
Tue Aug 16 12:00:49 BST 2011
Hi all,
Would anyone have a script to import Cufflinks output -more precisely the "transcripts.gtf" file- into an Ensembl database?
I'm specifically searching for a "Cufflink-gtf to Ensembl" script, not just any "gtf to Ensembl" script. The Cufflink gtf is rather compact with only transcript/exon lines.
I know this is easy to write, but if someone has already done it, I'd rather use it than reinvent the wheel.
Thanks,
Karyn.
--
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Karyn Megy, PhD
VectorBase / EnsemblGenomes
European Bioinformatics Institute
Wellcome Trust Genome Campus
Hinxton CB10 1SD - UK
Phone: +44.1223.49.25.92
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