[ensembl-dev] Cufflinks to Ensembl ?

Karyn Megy kmegy at ebi.ac.uk
Tue Aug 16 12:00:49 BST 2011


Hi all, 

Would anyone have a script to import Cufflinks output   -more precisely the "transcripts.gtf" file-   into an Ensembl database? 

I'm specifically searching for a "Cufflink-gtf to Ensembl" script, not just any "gtf  to Ensembl" script. The Cufflink gtf is rather compact with only transcript/exon lines. 

I know this is easy to write, but if  someone has already done it, I'd rather use it than reinvent the wheel. 

Thanks,
Karyn.
--
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              Karyn Megy, PhD
   VectorBase / EnsemblGenomes

European Bioinformatics Institute     
Wellcome Trust Genome Campus 
          Hinxton  CB10 1SD - UK 

Phone: +44.1223.49.25.92
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