[ensembl-dev] healthcheck errors

[Glenn Proctor]

Hi Sharon

Yes, you can check out the ensembl-release-62 branch of the
healthchecks. The error you're getting likely stems from different
versions of one or more classes being present; I just tried a fresh
checkout of the 62 branch and the DuplicateExons test runs OK.

Regards

Glenn.


On Mon, Apr 18, 2011 at 9:51 PM, Sharon Wei <weix at cshl.edu> wrote:
> Dear Ensemblers,
>
> Is there a version 62 branch for ensembl healthcheck?  I just checked out
> the HEAD version and run a simple test, but got the following error.
>
> [weix at brie ensj-healthcheck]$ sh run-healthcheck.sh -d
> oryza_glaberrima_core_33_62_w1  DuplicateExons
> Exception in thread "main" java.lang.UnsupportedClassVersionError: Bad
> version number in .class file
>        at java.lang.ClassLoader.defineClass1(Native Method)
>        at java.lang.ClassLoader.defineClass(ClassLoader.java:620)
>        at
> java.security.SecureClassLoader.defineClass(SecureClassLoader.java:124)
>        at java.net.URLClassLoader.defineClass(URLClassLoader.java:260)
>        at java.net.URLClassLoader.access$100(URLClassLoader.java:56)
>        at java.net.URLClassLoader$1.run(URLClassLoader.java:195)
>        at java.security.AccessController.doPrivileged(Native Method)
>        at java.net.URLClassLoader.findClass(URLClassLoader.java:188)
>        at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
>        at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:268)
>        at java.lang.ClassLoader.loadClass(ClassLoader.java:251)
>        at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:319)
>
> What is puzzling me is when I run the same test on a previous version (v56)
> of healthcheck, it ran through  O.K.
>
> [weix at brie ensj-healthcheck-59]$ sh run-healthcheck.sh -d
> oryza_glaberrima_core_33_62_w1  DuplicateExons
> DuplicateExons [oryza_glaberrima_core_33_62_w1] ........... FAILED
>
> ---- RESULTS BY TEST CASE ----
>
> org.ensembl.healthcheck.testcase.generic.DuplicateExons [Team responsible:
> Not set]
>  oryza_glaberrima_core_33_62_w1: Has at least 7352 duplicated exons.
>
> Any idea?
>
> Thanks,
>
>
> Sharon
>
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