[ensembl-dev] healthcheck errors

[Glenn Proctor]

Also, make sure you're using Java 6 (i.e. version 1.6 or greater of
the JDK/JRE) - the error you're getting can be indicative of trying to
use an older Java version to run code compiled with a more recent
version.

Regards

Glenn.


On Mon, Apr 18, 2011 at 10:19 PM, Glenn Proctor <glenn at ebi.ac.uk> wrote:
> Hi Sharon
>
> Yes, you can check out the ensembl-release-62 branch of the
> healthchecks. The error you're getting likely stems from different
> versions of one or more classes being present; I just tried a fresh
> checkout of the 62 branch and the DuplicateExons test runs OK.
>
> Regards
>
> Glenn.
>
>
> On Mon, Apr 18, 2011 at 9:51 PM, Sharon Wei <weix at cshl.edu> wrote:
>> Dear Ensemblers,
>>
>> Is there a version 62 branch for ensembl healthcheck?  I just checked out
>> the HEAD version and run a simple test, but got the following error.
>>
>> [weix at brie ensj-healthcheck]$ sh run-healthcheck.sh -d
>> oryza_glaberrima_core_33_62_w1  DuplicateExons
>> Exception in thread "main" java.lang.UnsupportedClassVersionError: Bad
>> version number in .class file
>>        at java.lang.ClassLoader.defineClass1(Native Method)
>>        at java.lang.ClassLoader.defineClass(ClassLoader.java:620)
>>        at
>> java.security.SecureClassLoader.defineClass(SecureClassLoader.java:124)
>>        at java.net.URLClassLoader.defineClass(URLClassLoader.java:260)
>>        at java.net.URLClassLoader.access$100(URLClassLoader.java:56)
>>        at java.net.URLClassLoader$1.run(URLClassLoader.java:195)
>>        at java.security.AccessController.doPrivileged(Native Method)
>>        at java.net.URLClassLoader.findClass(URLClassLoader.java:188)
>>        at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
>>        at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:268)
>>        at java.lang.ClassLoader.loadClass(ClassLoader.java:251)
>>        at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:319)
>>
>> What is puzzling me is when I run the same test on a previous version (v56)
>> of healthcheck, it ran through  O.K.
>>
>> [weix at brie ensj-healthcheck-59]$ sh run-healthcheck.sh -d
>> oryza_glaberrima_core_33_62_w1  DuplicateExons
>> DuplicateExons [oryza_glaberrima_core_33_62_w1] ........... FAILED
>>
>> ---- RESULTS BY TEST CASE ----
>>
>> org.ensembl.healthcheck.testcase.generic.DuplicateExons [Team responsible:
>> Not set]
>>  oryza_glaberrima_core_33_62_w1: Has at least 7352 duplicated exons.
>>
>> Any idea?
>>
>> Thanks,
>>
>>
>> Sharon
>>
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>>
>