[ensembl-dev] healthcheck errors

Sharon Wei weix at cshl.edu
Mon Apr 18 21:51:22 BST 2011


Dear Ensemblers,

Is there a version 62 branch for ensembl healthcheck?  I just checked 
out the HEAD version and run a simple test, but got the following error.

[weix at brie ensj-healthcheck]$ sh run-healthcheck.sh -d 
oryza_glaberrima_core_33_62_w1  DuplicateExons
Exception in thread "main" java.lang.UnsupportedClassVersionError: Bad 
version number in .class file
         at java.lang.ClassLoader.defineClass1(Native Method)
         at java.lang.ClassLoader.defineClass(ClassLoader.java:620)
         at 
java.security.SecureClassLoader.defineClass(SecureClassLoader.java:124)
         at java.net.URLClassLoader.defineClass(URLClassLoader.java:260)
         at java.net.URLClassLoader.access$100(URLClassLoader.java:56)
         at java.net.URLClassLoader$1.run(URLClassLoader.java:195)
         at java.security.AccessController.doPrivileged(Native Method)
         at java.net.URLClassLoader.findClass(URLClassLoader.java:188)
         at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:268)
         at java.lang.ClassLoader.loadClass(ClassLoader.java:251)
         at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:319)

What is puzzling me is when I run the same test on a previous version 
(v56) of healthcheck, it ran through  O.K.

[weix at brie ensj-healthcheck-59]$ sh run-healthcheck.sh -d 
oryza_glaberrima_core_33_62_w1  DuplicateExons
DuplicateExons [oryza_glaberrima_core_33_62_w1] ........... FAILED

---- RESULTS BY TEST CASE ----

org.ensembl.healthcheck.testcase.generic.DuplicateExons [Team 
responsible: Not set]
   oryza_glaberrima_core_33_62_w1: Has at least 7352 duplicated exons.

Any idea?

Thanks,


Sharon




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