[ensembl-dev] sources of sequence variants

Bert Overduin bert at ebi.ac.uk
Sun Oct 24 22:05:54 BST 2010

Hello Andrea,

That means that for cattle we only have variation dat from dbSNP ....


On Sun, Oct 24, 2010 at 8:50 PM, Andrea Edwards <edwardsa at cs.man.ac.uk>wrote:

>  Hi
> I am trying to find out what sources of sequence variants ensembl uses for
> cattle data apart from dbSNP. On the website it says:
> http://www.ensembl.org/info/docs/variation/index.html
> Ensembl also includes data from other sources. For a complete list, go to a
> species Location page (e.g. for human<http://www.ensembl.org/Homo_sapiens/Location/View?r=6:133017695-133161157>),
> and click on the "Configure Your Page" link on the left-hand side. The
> variation section of this contains a detailed description of all sources of
> variation data for that species. For example, in human there is data from
> Illumina chips, Affy GeneChip Arrays<http://www.affymetrix.com/index.affx>,
> the European Genome-phenome Archive (EGA)
> <http://www.ebi.ac.uk/ega/page.php>as well as an increasing amount of
> phenotype data.
> If you do this for cow it just says:
> -all sources
> -dbSNP
> How do I find out the other sources apart from dbSNP?
> thanks
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Bert Overduin, Ph.D.
PANDA Coordination & Outreach

EMBL - European Bioinformatics Institute
Wellcome Trust Genome Campus
Hinxton, Cambridge CB10 1SD
United Kingdom

http://www.ebi.ac.uk/~bert <http://www.ebi.ac.uk/%7Ebert>
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