[ensembl-dev] RefSeq <-> Ensembl Transcript ID?

[Cei Abreu-Goodger]

Thanks Bert and Sergei,

Yeah, I was kind of hoping that there would be a direct relationship 
between transcripts. But if the connection is done at the protein level, 
I'll have to drop down to gene IDs.

Does anyone in Ensembl know if there's a plan to perform mapping at the 
transcript level to UCSC or NCBI?

Cheers,

Cei

On 07/10/2010 14:57, Bert Overduin wrote:
> Hello Cei,
>
> I think the NCBI RefSeq IDs are on the level of the translation, not the
> transcript. So, you have to get the DBEntries for the translation of your
> transcript or alternatively get the DBLinks for your transcript.
>
> Cheers,
> Bert
>
> On Thu, Oct 7, 2010 at 2:40 PM, Cei Abreu-Goodger<cei at ebi.ac.uk>  wrote:
>
>> Hello,
>>
>> Is it possible to obtain the relationship between Ensembl Transcript IDs
>> and NCBI's RefSeq transcript ids (NM_########)? I've been searching in the
>> DBEntries assigned to the transcripts, but can't seem to find this.
>>
>> Thanks!
>>
>> Cei
>>
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>
>
>