[ensembl-dev] REl 59 download issues: homo_sapiens_funcgen_59_37d drosophila_melanogaster_funcgen_59_525a mus_musculus_funcgen_59_37l

[jorge zamora]

Hello Nathan,

Sorry for that. Stephen dropped most of it yesterday but it seems some
the views got away without being deleted. We definitively got a plan to
avoid that in 60.

Jorge.


On Thu, 2010-08-12 at 11:37 +0200, volker.weinberger at novartis.com wrote:
> 
> Dear Nathan, 
> 
> it appears that the same issue is again present in Release 59, this
> time spotted in homo_sapiens_funcgen_59_37d,
> drosophila_melanogaster_funcgen_59_525a, and
> mus_musculus_funcgen_59_37l, which contain files like 
> 
> ./mus_musculus_funcgen_59_37l/annotated_feature_view.txt.gz 
> ./mus_musculus_funcgen_59_37l/cs_sr_view.txt.gz 
> ./mus_musculus_funcgen_59_37l/external_feature_ox_view.txt.gz 
> ./mus_musculus_funcgen_59_37l/external_feature_view.txt.gz 
> ./mus_musculus_funcgen_59_37l/feature_set_view.txt.gz 
> ./mus_musculus_funcgen_59_37l/fs_displayable_view.txt.gz 
> ./mus_musculus_funcgen_59_37l/regulatory_feature_view.txt.gz 
> 
> Please drop. 
> 
> Thanks, 
> 
> Volker 
> 
> 
> 
> 
> 
> Nathan Johnson
> <njohnson at ebi.ac.uk> 
> Sent by:
> owner-ensembl-dev at ebi.ac.uk 
> 
> 07.06.2010 12:39 
>          Please respond to
>        ensembl-dev at ebi.ac.uk
> 
> 
> 
> 
>                To
> ensembl-dev at ebi.ac.uk 
>                cc
> 
>           Subject
> Re:
> [ensembl-dev]REl
> 58 download
> issues:
> snp_mart_58.sql
> 
> 
> 
> 
> 
> 
> 
> 
> Hi Volker
> 
> wrt the 'view' tables in the eFG DB.  These are a by product of our
> mart build process and should have been removed prior to release.
>  They must have slipped through our healthchecks somehow. They can be
> dropped.
> 
> Thanks
> 
> Nath
> 
> On 7 Jun 2010, at 10:58, volker.weinberger at novartis.com wrote:
> 
> > 
> > Hi, 
> > 
> > could you please verify the following files from the data download
> area: 
> > 
> > - snp_mart_58.sql.gz:    which currently defines only a single
> table 
> > - drosophila_melanogaster_funcgen_58_513b.sql.gz  :  some table
> definitions may be missing, i.e. there are more data files (a number
> of files named *view*) than table definitons. 
> > 
> > Thanks, 
> > Volker
> > _________________________
> > 
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> Nathan Johnson
> Scientific Programmer
> European Bioinformatics Institute
> Wellcome Trust Genome Campus
> Hinxton
> Cambridge CB10 1SD
> Email: njohnson at ebi.ac.uk
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> 
> 
> 
> 
> 
> 
> _________________________
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> _________________________
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> CONFIDENTIALITY NOTICE
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