[ensembl-dev] REl 59 download issues: homo_sapiens_funcgen_59_37d drosophila_melanogaster_funcgen_59_525a mus_musculus_funcgen_59_37l

Stephen Trevanion st3 at sanger.ac.uk
Thu Aug 12 10:44:09 BST 2010


Dear Volker,

These were removed from the FTP site yesterday

Regards,

Steve

On 08/12/10 10:37, volker.weinberger at novartis.com wrote:
>
> Dear Nathan,
>
> it appears that the same issue is again present in Release 59, this 
> time spotted in homo_sapiens_funcgen_59_37d, 
> drosophila_melanogaster_funcgen_59_525a, and 
> mus_musculus_funcgen_59_37l, which contain files like
>
> ./mus_musculus_funcgen_59_37l/annotated_feature_view.txt.gz
> ./mus_musculus_funcgen_59_37l/cs_sr_view.txt.gz
> ./mus_musculus_funcgen_59_37l/external_feature_ox_view.txt.gz
> ./mus_musculus_funcgen_59_37l/external_feature_view.txt.gz
> ./mus_musculus_funcgen_59_37l/feature_set_view.txt.gz
> ./mus_musculus_funcgen_59_37l/fs_displayable_view.txt.gz
> ./mus_musculus_funcgen_59_37l/regulatory_feature_view.txt.gz
>
> Please drop.
>
> Thanks,
>
> Volker
>
>
>
>
>
> *Nathan Johnson <njohnson at ebi.ac.uk>*
> Sent by: owner-ensembl-dev at ebi.ac.uk
>
> 07.06.2010 12:39
> Please respond to
> ensembl-dev at ebi.ac.uk
>
>
> 	
> To
> 	ensembl-dev at ebi.ac.uk
> cc
> 	
> Subject
> 	Re: [ensembl-dev]REl 58 download issues: snp_mart_58.sql
>
>
>
> 	
>
>
>
>
>
> Hi Volker
>
> wrt the 'view' tables in the eFG DB.  These are a by product of our 
> mart build process and should have been removed prior to release. 
>  They must have slipped through our healthchecks somehow. They can be 
> dropped.
>
> Thanks
>
> Nath
>
> On 7 Jun 2010, at 10:58, volker.weinberger at novartis.com wrote:
>
> >
> > Hi,
> >
> > could you please verify the following files from the data download 
> area:
> >
> > - snp_mart_58.sql.gz:    which currently defines only a single table
> > - drosophila_melanogaster_funcgen_58_513b.sql.gz  :  some table 
> definitions may be missing, i.e. there are more data files (a number 
> of files named *view*) than table definitons.
> >
> > Thanks,
> > Volker
> > _________________________
> >
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> Nathan Johnson
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> European Bioinformatics Institute
> Wellcome Trust Genome Campus
> Hinxton
> Cambridge CB10 1SD
> Email: njohnson at ebi.ac.uk
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