[ensembl-dev] REl 59 download issues: homo_sapiens_funcgen_59_37d drosophila_melanogaster_funcgen_59_525a mus_musculus_funcgen_59_37l

[volker.weinberger at novartis.com]

Dear Nathan,

it appears that the same issue is again present in Release 59, this time 
spotted in homo_sapiens_funcgen_59_37d, 
drosophila_melanogaster_funcgen_59_525a, and mus_musculus_funcgen_59_37l, 
which contain files like

./mus_musculus_funcgen_59_37l/annotated_feature_view.txt.gz
./mus_musculus_funcgen_59_37l/cs_sr_view.txt.gz
./mus_musculus_funcgen_59_37l/external_feature_ox_view.txt.gz
./mus_musculus_funcgen_59_37l/external_feature_view.txt.gz
./mus_musculus_funcgen_59_37l/feature_set_view.txt.gz
./mus_musculus_funcgen_59_37l/fs_displayable_view.txt.gz
./mus_musculus_funcgen_59_37l/regulatory_feature_view.txt.gz

Please drop.

Thanks,

Volker






Nathan Johnson <njohnson at ebi.ac.uk> 
Sent by: owner-ensembl-dev at ebi.ac.uk
07.06.2010 12:39
Please respond to
ensembl-dev at ebi.ac.uk


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Re: [ensembl-dev]REl 58 download issues: snp_mart_58.sql






Hi Volker

wrt the 'view' tables in the eFG DB.  These are a by product of our mart 
build process and should have been removed prior to release.  They must 
have slipped through our healthchecks somehow. They can be dropped.

Thanks

Nath

On 7 Jun 2010, at 10:58, volker.weinberger at novartis.com wrote:

> 
> Hi, 
> 
> could you please verify the following files from the data download area: 

> 
> - snp_mart_58.sql.gz:    which currently defines only a single table 
> - drosophila_melanogaster_funcgen_58_513b.sql.gz  :  some table 
definitions may be missing, i.e. there are more data files (a number of 
files named *view*) than table definitons. 
> 
> Thanks, 
> Volker
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Nathan Johnson
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European Bioinformatics Institute
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
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