[ensembl-dev] [ensembl-dev ]REl 59 download issues: homo_sapiens_funcgen_59_37d drosophila_melanogaster_funcgen_59_525a mus_musculus_funcgen_59_37l

[Nathan Johnson]

Hi Volker

Many apologies for this. We already knew about it and I think you will find that the problem has already been rectified.

We have experienced a problem rsyncing tables after the healthchecks are performed.  We have put in place a process which should prevent this in future.

Thanks

Nath


On 12 Aug 2010, at 10:33, volker.weinberger at novartis.com wrote:

> 
> Dear Nathan, 
> 
> it appears that the same issue is again present in Release 59, this time spotted in homo_sapiens_funcgen_59_37d, drosophila_melanogaster_funcgen_59_525a, and mus_musculus_funcgen_59_37l, which contain files like 
> 
> ./mus_musculus_funcgen_59_37l/annotated_feature_view.txt.gz 
> ./mus_musculus_funcgen_59_37l/cs_sr_view.txt.gz 
> ./mus_musculus_funcgen_59_37l/external_feature_ox_view.txt.gz 
> ./mus_musculus_funcgen_59_37l/external_feature_view.txt.gz 
> ./mus_musculus_funcgen_59_37l/feature_set_view.txt.gz 
> ./mus_musculus_funcgen_59_37l/fs_displayable_view.txt.gz 
> ./mus_musculus_funcgen_59_37l/regulatory_feature_view.txt.gz 
> 
> Please drop. 
> 
> Thanks, 
> 
> Volker 
> 
> 
> 
> 
> 
> Nathan Johnson <njohnson at ebi.ac.uk> 
> Sent by: owner-ensembl-dev at ebi.ac.uk
> 07.06.2010 12:39
> Please respond to
> ensembl-dev at ebi.ac.uk
> 
> To
> ensembl-dev at ebi.ac.uk
> cc
> Subject
> Re: [ensembl-dev]REl 58 download issues: snp_mart_58.sql
> 
> 
> 
> 
> 
> Hi Volker
> 
> wrt the 'view' tables in the eFG DB.  These are a by product of our mart build process and should have been removed prior to release.  They must have slipped through our healthchecks somehow. They can be dropped.
> 
> Thanks
> 
> Nath
> 
> On 7 Jun 2010, at 10:58, volker.weinberger at novartis.com wrote:
> 
> > 
> > Hi, 
> > 
> > could you please verify the following files from the data download area: 
> > 
> > - snp_mart_58.sql.gz:    which currently defines only a single table 
> > - drosophila_melanogaster_funcgen_58_513b.sql.gz  :  some table definitions may be missing, i.e. there are more data files (a number of files named *view*) than table definitons. 
> > 
> > Thanks, 
> > Volker
> > _________________________
> > 
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> 
> Nathan Johnson
> Scientific Programmer
> European Bioinformatics Institute
> Wellcome Trust Genome Campus
> Hinxton
> Cambridge CB10 1SD
> Email: njohnson at ebi.ac.uk
> TelNo: (+44)1223 492629
> 
> 
> 
> 
> 
> 
> 
> _________________________
> 
> CONFIDENTIALITY NOTICE
> 
> The information contained in this e-mail message is intended only for the exclusive use of the individual or entity named above and may contain information that is privileged, confidential or exempt from disclosure under applicable law. If the reader of this message is not the intended recipient, or the employee or agent responsible for delivery of the message to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please notify the sender immediately by e-mail and delete the material from any computer.  Thank you.
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Nathan Johnson
Scientific Programmer
European Bioinformatics Institute
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
Email: njohnson at ebi.ac.uk
TelNo: (+44)1223 492629





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