[ensembl-dev] Request for help on TranslationAdaptor

[Jan-hinnerk Vogel]

Hello Alison,

it's a bug in the TranscriptAdaptor which was present in API version  
58 and 59 and has been fixed now,
so if you just update your code it should work.

Jan

On 4 Aug 2010, at 11:33, Alison Lee wrote:

> Hi,
>
> We have been running the Ensembl genebuild pipeline using v58 code.  
> GeneBuilder fails at TranslationAdaptor->fetch_by_Transcript with  
> the message "Could not find start or end exon in  
> transcript_id=1386". I think the reason is the module fails while  
> trying to match start/end exons in the output db GENEBUILD_DB when  
> it should be the source db UTR_DB.
>
> I have checked v59 code and there have been many changes  
> (Transcript, TranscriptAdaptor, TranslationAdaptor), so perhaps one  
> of these already addresses this problem. However I'm not sure which  
> module I should download.
>
> Can the Ensembl team please provide some tips?
>
> Thank you.
>
> Alison
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