[ensembl-dev] Possible Missing BioMart MySQL Files for Ensembl Genomes 59

[Andres Veidenberg]

Hi Uku,

Thank you for letting us know. 
We’re currently regenerating the files which should be available soon (I’ll send you a follow-up to confirm).

Kind Regards,

Andres Veidenberg
Ensembl Webteam

> On 5. Jun 2024, at 10:00, Uku Raudvere <uku.raudvere at ut.ee> wrote:
> 
> Hi all,
> 
> I'm working with Ensembl Genomes and I noticed that I can't find the BioMart SQL data for release 59 on the FTP site. Specifically, I was looking for the following directories:
> ftp.ensemblgenomes.org/pub/release-59/plants/mysql/plants_mart_59 <http://ftp.ensemblgenomes.org/pub/release-59/plants/mysql/plants_mart_59>
> ftp.ensemblgenomes.org/pub/release-59/protists/mysql/protists_mart_59 <http://ftp.ensemblgenomes.org/pub/release-59/protists/mysql/protists_mart_59>
> ftp.ensemblgenomes.org/pub/release-59/metazoa/mysql/metazoa_mart_59 <http://ftp.ensemblgenomes.org/pub/release-59/metazoa/mysql/metazoa_mart_59>
> ftp.ensemblgenomes.org/pub/release-59/fungi/mysql/fungi_mart_59 <http://ftp.ensemblgenomes.org/pub/release-59/fungi/mysql/fungi_mart_59>
> For reference, the corresponding directories for the previous release (58) exists and can be accessed:
> ftp.ensemblgenomes.org/pub/release-58/plants/mysql/plants_mart_58/ <http://ftp.ensemblgenomes.org/pub/release-58/plants/mysql/plants_mart_58/>
> I might be missing something on my end, so can anyone confirm if these directories will be added later or if there's a new location for these files in release 59? Any information on this would be greatly appreciated.
> 
> Thanks,
> Uku Raudvere
> 
> 
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