[ensembl-dev] BioMart information on FTP server

[Wolf Beat]

Hi Ben,

thank you for that information. Do you have any additional information about this? most notably, where could those files be found? For our analysis a full archive of the analysis data we need is required, and those two are the last ones missing.

Kind regards

Beat




Dr Beat Wolf, PhD ▪ Assistant Professor ▪ Member of iCoSys Institute
University of Applied Sciences and Arts Western Switzerland ▪ Pérolles 80 ▪ CH-1700 Fribourg
Member of University of Applied Sciences of Western Switzerland
https://www.heia-fr.ch<https://eia-fr.ch/> ▪ <http://humantech.institute/> https://icosys.ch/

________________________________
Von: Dev <dev-bounces at ensembl.org> im Auftrag von Benjamin Moore <bmoore at ebi.ac.uk>
Gesendet: Mittwoch, 27. September 2023 13:43
An: dev at ensembl.org <dev at ensembl.org>
Betreff: Re: [ensembl-dev] BioMart information on FTP server


Hi Beat,


The mim_gene_accession and rnacentral mappings are not included in the Ensembl FTP file dumps.


Best wishes


Ben


On 24/09/2023 14:24, Wolf Beat wrote:
Hi,

i have a question on how to find some information in the ensembl FTP server.

Notably, the GRCH38 i'm wondering where i can find the following two fields which are accessible through BioMart:

mim_gene_accession
rnacentral

I could find all other information that i looked for, but those i'm can't find.

Kind regards

Beat Wolf





Dr Beat Wolf, PhD ▪ Assistant Professor ▪ Member of iCoSys Institute
University of Applied Sciences and Arts Western Switzerland ▪ Pérolles 80 ▪ CH-1700 Fribourg
Member of University of Applied Sciences of Western Switzerland
https://www.heia-fr.ch<https://eia-fr.ch/> ▪ https://icosys.ch/




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--
Dr. Ben Moore (he/him)
Ensembl Outreach Manager

European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
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bmoore at ebi.ac.uk<mailto:bmoore at ebi.ac.uk>
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