[ensembl-dev] assembly mapping procedure

Hiram Clawson hiram at soe.ucsc.edu
Wed Sep 27 22:45:45 BST 2023


Good Afternoon Ensembl:

Can you supply a pointer to the documentation that describes the procedures
used to make the 'assembly mapping' chain file available at:

   http://ftp.ensembl.org/pub/assembly_mapping/homo_sapiens/GRCh37_to_GRCh38.chain.gz

It must be close to this page somewhere:

    http://useast.ensembl.org/info/genome/compara/analyses.html

I'm looking for more detail than just 'lastz output is chained'

I know it must be somewhere on the Ensembl web site, but I'm not immediately
finding that.  Thank you for your assistance.

--Hiram





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