[ensembl-dev] Missing CpG island tracks from Pig genome

[Thibaut Hourlier]

Hi Simon,
This is a mistake from us however it is easily “fixable" until it is properly fixed in a next release.

We started using Sscrofa11.1 since release 91 so the CpG data is present for any release between 91 and 106 included

Hope this helps
Thibaut

> On 21 Oct 2022, at 11:30, Marc Chakiachvili <mchakiachvili at ebi.ac.uk> wrote:
> 
> Hi Simon, 
> 
> Can you tell me exactly from which path you are expecting the data? There are some missing files at the moment on our FTP, which I am fixing right now, but it'll take some time.
> 
> I just want to check that your expected data aren't part of this. 
> 
> Thanks! 
> 
> Marc (Ensembl Production Team)
> 
> 
> 
> On Fri, 2022-10-21 at 10:26 +0000, Simon Andrews wrote:
>> I've just had a report from one of our users that our genome viewer doesn't show CpG island features for the latest pig genome (Sscrofa11.1).  We pull the data from Ensembl, and looking on the web site I can't see the track on there either.
>>  
>> Is there a reason this track is no longer available?  Is it an oversight or a deliberate removal?  This annotation is useful for a lot of people doing epigenetics work.
>>  
>> Any information I can pass back to our users would be appreciated.
>>  
>> Simon.
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