[ensembl-dev] GEMJ population variation database access

[Duarte Molha]

Hi Benjamin and Diana

Thank you for your help.

I created a script that connects to the rest server and extracts the data I
want. Except that the post fetch, if I give more than 10 variants as input,
returns a 200 OK code but no data.
Can you explain how this is possible?

I assumed that if there is something wrong with my request (like it does if
I submit more than 200 variants in a post request) I would get back some
error code
But I am getting a 200OK code and yet no data returned.

Thanks again for your help
Duarte


On Fri, 26 Nov 2021 at 16:35, Diana Lemos <dlemos at ebi.ac.uk> wrote:

> Hi Duarte,
>
> Thanks for contacting us. To answer your question, the best way to
> access this data is through the rest api (https://rest.ensembl.org/),
> the user guide is here (https://github.com/Ensembl/ensembl-rest/wiki).
>
> You can access frequency data with the vep endpoint using option pops=1.
> However, if you can specify your use case we can probably help advise
> further.
>
>
> Best wishes,
>
> Diana
>
>
> On 22/11/2021 14:44, Duarte Molha wrote:
> > Hi
> >
> > I was interested in accessing the GEMJ variation data you have in the
> > population genetics section
> > It does not seem to be available in Biomart
> >
> > Can you point me in the right direction on how to access it either in
> > perl api or rest api?
> >
> > Thanks
> >
> > Duarte
> >
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