[ensembl-dev] VEP Web interface available inside Ensembl101.ova?

[Andrew Parton]

Hi Mike,

You can access web VEP at the following link: https://www.ensembl.org/Homo_sapiens/Tools/VEP. Web VEP allows you to submit up a file of up to 50MB for processing. 

The virtual machine contains the command line version of VEP, which can be used to analyse larger files and provide additional annotations. You can find documentation for command line VEP here: https://www.ensembl.org/info/docs/tools/vep/script/index.html

Alternatively, you can access VEP through our REST server here: https://rest.ensembl.org/

Kind Regards,
Andrew



> On 22 Jan 2021, at 18:24, Rightmire, Michael Paul <m.rightmire at dkfz-heidelberg.de> wrote:
> 
> 
> Good Morning, 
> 
> 
> 
> VEP annotations can be obtained directly from the Ensemble website (VEP Web interface I.e. https://www.ensembl.org/info/docs/tools/vep/online/index.html)
> 
> Is this tool available inside the downloadable Virtual Machine (Ensembl101.ova?) If so, is there documentation/tutorials?
> 
> 
> 
> Many thanks!
> Mike​
> 
> Michael Rightmire
> Bioinformatics and Omics Data Analytics (B240)
> Omics Software Architect
> 
> German Cancer Research Center (DKFZ)
> Im Neuenheimer Feld 280
> 69120 Heidelberg
> Germany
> phone: +49 176 7131 8758
> fax: +49 6221 42-3563
> 
> M.Rightmire at dkfz-heidelberg.de
> www.dkfz.de
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