[ensembl-dev] Asking help for incorrect VEP results

[Anne Lyle]

Hi Huaiyuan

Are you using the online VEP on our website, or the downloaded version?

Cheers

Anne


> On 26 Oct 2020, at 06:24, 孙怀远 <sunhy at mail.cbi.pku.edu.cn> wrote:
> 
> Hi,
> 
> 
> 
> I'm a PhD candidate from Ge Gao's group. When using VEP, I found SNPs predicted to be missense variants, but the ORF was annotated incorrectly. For example, the ORF of a SNP on chr15:89582890 is 89582890-89582892 in gencode.v34, but annotated to be 89582890-89582888 in reverse strand. Please help me correct these annotations. The VEP version I used is v100.3.
> 
> 
> 
> Thank you!
> 
> 
> 
> Huaiyuan Sun
> 
> 
> 
> 
> Huaiyuan Sun Ph.D. candidate
> Peking-Tsinghua Center for Life Sciences 
> Peking University, Beijing 100871, China
> Tel: 18810504686
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